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	<title>Comments for Science as Social Enterprise</title>
	<atom:link href="http://blogs.cambia.org/raj/comments/feed/" rel="self" type="application/rss+xml" />
	<link>http://blogs.cambia.org/raj</link>
	<description>Thoughts from Richard Jefferson and Cambia on democratizing science-enabled innovation</description>
	<lastBuildDate>Mon, 10 Jan 2011 16:49:12 +0000</lastBuildDate>
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		<title>Comment on The hologenome theory of evolution by Alexander SAVINOV</title>
		<link>http://blogs.cambia.org/raj/2010/11/16/the-hologenome-theory-of-evolution/#comment-22</link>
		<dc:creator>Alexander SAVINOV</dc:creator>
		<pubDate>Mon, 10 Jan 2011 16:49:12 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/?p=97#comment-22</guid>
		<description>Dear Colleagues,
 I am very interested in the topic you are discussing.
 I would like to inform you that I in 2005 (see article Savinov, 2005) introduced the concepts of &quot;autocenosis and« democenosis ».
 Autocenosis - a symbiotic system, which includes the host and its symbionts (prokaryotes and eukaryotes).
Democenosis - a system of autocenosis.
 Based on these concepts I am trying to develop a symbiotic paradigm.

 Literature

 Savinov AB The new paradigm of population: population as a symbiotic self-governing system, &quot;Vestn. Nizhny Novgorod. Univ NI Lobachevsky. Ser.Biology. 2005. Vol. 1 (9). S. 181-196. (http://macroevolution.narod.ru/savinov.htm)
 More on the topic look at my website:
http://www.sabcor.dmls.ru/
 Yours sincerely,
 Dr. A. Savinov</description>
		<content:encoded><![CDATA[<p>Dear Colleagues,<br />
 I am very interested in the topic you are discussing.<br />
 I would like to inform you that I in 2005 (see article Savinov, 2005) introduced the concepts of &#8220;autocenosis and« democenosis ».<br />
 Autocenosis &#8211; a symbiotic system, which includes the host and its symbionts (prokaryotes and eukaryotes).<br />
Democenosis &#8211; a system of autocenosis.<br />
 Based on these concepts I am trying to develop a symbiotic paradigm.</p>
<p> Literature</p>
<p> Savinov AB The new paradigm of population: population as a symbiotic self-governing system, &#8220;Vestn. Nizhny Novgorod. Univ NI Lobachevsky. Ser.Biology. 2005. Vol. 1 (9). S. 181-196. (<a href="http://macroevolution.narod.ru/savinov.htm" rel="nofollow">http://macroevolution.narod.ru/savinov.htm</a>)<br />
 More on the topic look at my website:<br />
<a href="http://www.sabcor.dmls.ru/" rel="nofollow">http://www.sabcor.dmls.ru/</a><br />
 Yours sincerely,<br />
 Dr. A. Savinov</p>
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	</item>
	<item>
		<title>Comment on The hologenome theory of evolution by Alexander SAVINOV</title>
		<link>http://blogs.cambia.org/raj/2010/11/16/the-hologenome-theory-of-evolution/#comment-21</link>
		<dc:creator>Alexander SAVINOV</dc:creator>
		<pubDate>Mon, 10 Jan 2011 16:21:46 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/?p=97#comment-21</guid>
		<description>Савинов А.Б. Новая популяционная парадигма: популяция как симбиотическая самоуправляемая система // Вестн. Нижегород. ун-та им. Н.И. Лобачевского. Сер. Биология. 2005. Вып. 1 (9). С. 181–196. (http://macroevolution.narod.ru/savinov.htm)
Савинов А.Б. Биосистемология (системные основы теории эволюции и экологии). Н.Новгород: Изд-во ННГУ, 2006. 205 с.
(http://rogov.zwz.ru/Мacroevolution/savinov.doc)</description>
		<content:encoded><![CDATA[<p>Савинов А.Б. Новая популяционная парадигма: популяция как симбиотическая самоуправляемая система // Вестн. Нижегород. ун-та им. Н.И. Лобачевского. Сер. Биология. 2005. Вып. 1 (9). С. 181–196. (<a href="http://macroevolution.narod.ru/savinov.htm" rel="nofollow">http://macroevolution.narod.ru/savinov.htm</a>)<br />
Савинов А.Б. Биосистемология (системные основы теории эволюции и экологии). Н.Новгород: Изд-во ННГУ, 2006. 205 с.<br />
(<a href="http://rogov.zwz.ru/Мacroevolution/savinov.doc" rel="nofollow">http://rogov.zwz.ru/Мacroevolution/savinov.doc</a>)</p>
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		<title>Comment on The hologenome theory of evolution by Alexander SAVINOV</title>
		<link>http://blogs.cambia.org/raj/2010/11/16/the-hologenome-theory-of-evolution/#comment-20</link>
		<dc:creator>Alexander SAVINOV</dc:creator>
		<pubDate>Mon, 10 Jan 2011 16:17:53 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/?p=97#comment-20</guid>
		<description>Proc. IV Congress Rus. Soc. Parasitol. – RAS.
 «Parasitology in XXI century – problems, methods, solutions».
Vol. 3. St. Petersburg: «Lema». 2008. P. 122–126

AUTOCENOSIS AND DEMOCENOSIS – NEW CATEGORY FOR PARASITOLOGY, ECOLOGY AND EVOLUTIONARY BIOLOGY

Savinov A.B.

Nizhni Novgorod State University, pr. Gagarina 23-1,
Nizhni Novgorod 603950 Russia,
sabcor@mail.ru

Abstract
Representation about the population concerning a grouping bionts only one species version became classical. However achievements of modern ecology testify to it for organisms of various regular groups various symbolical attitudes (parasitism, mutualism), mentioning is a lot of levels of the organization (from subcellular up to organismic). Therefore on the basis of modern data about symbiogenesis (in various groups of organisms) and cybernetic positions the new paradigm is offered by the author according to whom everyone biont is formulated autocenosis, and the population – democenosis. In the synthetic theory of evolution elements of a population are bionts (organisms), and the population is presented by elementary evolutionary unit. From positions of the author as elementary evolutionary unit it should be considered democenosis. New categories «autocenosis» and «democenosis» should change gradually character of scientific thinking in ecology, parasitology and evolutionary biology, to give rise to a new epoch of biological researches.</description>
		<content:encoded><![CDATA[<p>Proc. IV Congress Rus. Soc. Parasitol. – RAS.<br />
 «Parasitology in XXI century – problems, methods, solutions».<br />
Vol. 3. St. Petersburg: «Lema». 2008. P. 122–126</p>
<p>AUTOCENOSIS AND DEMOCENOSIS – NEW CATEGORY FOR PARASITOLOGY, ECOLOGY AND EVOLUTIONARY BIOLOGY</p>
<p>Savinov A.B.</p>
<p>Nizhni Novgorod State University, pr. Gagarina 23-1,<br />
Nizhni Novgorod 603950 Russia,<br />
<a href="mailto:sabcor@mail.ru">sabcor@mail.ru</a></p>
<p>Abstract<br />
Representation about the population concerning a grouping bionts only one species version became classical. However achievements of modern ecology testify to it for organisms of various regular groups various symbolical attitudes (parasitism, mutualism), mentioning is a lot of levels of the organization (from subcellular up to organismic). Therefore on the basis of modern data about symbiogenesis (in various groups of organisms) and cybernetic positions the new paradigm is offered by the author according to whom everyone biont is formulated autocenosis, and the population – democenosis. In the synthetic theory of evolution elements of a population are bionts (organisms), and the population is presented by elementary evolutionary unit. From positions of the author as elementary evolutionary unit it should be considered democenosis. New categories «autocenosis» and «democenosis» should change gradually character of scientific thinking in ecology, parasitology and evolutionary biology, to give rise to a new epoch of biological researches.</p>
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		<title>Comment on Purging the backlog of thoughts by Richard Jefferson</title>
		<link>http://blogs.cambia.org/raj/2010/11/12/purging-the-backlog-of-thoughts/#comment-19</link>
		<dc:creator>Richard Jefferson</dc:creator>
		<pubDate>Mon, 10 Jan 2011 06:26:41 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/?p=89#comment-19</guid>
		<description>Jason, don&#039;t know if you&#039;re being sarcastic, wry, ironic, or otherwise tweaking me for my appalling atherosclerosis of the pen, but I&#039;ll choose to think this will be my open raj-ware.

real soon now.</description>
		<content:encoded><![CDATA[<p>Jason, don&#8217;t know if you&#8217;re being sarcastic, wry, ironic, or otherwise tweaking me for my appalling atherosclerosis of the pen, but I&#8217;ll choose to think this will be my open raj-ware.</p>
<p>real soon now.</p>
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		<title>Comment on The Hologenome &amp; Hologenomics: a different lens on evolution by Jacob Shwartz-Lucas</title>
		<link>http://blogs.cambia.org/raj/2007/09/06/the-hologenome-hologenomics/#comment-9</link>
		<dc:creator>Jacob Shwartz-Lucas</dc:creator>
		<pubDate>Sat, 13 Nov 2010 13:23:48 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/index.php/2007/09/06/the-hologenome-hologenomics/#comment-9</guid>
		<description>Fascinating!

The closing idea that  studying life as a hologenome or even a holosystem stands to make life un-ownable and with ecologicallly minded site specificity is wonderful, indeed ( with high hopes) vastly furthering the paradigm of life science as social enterprise.

&quot;there&#039;s a revolution in the wings that will be exciting and equitable&quot;-you</description>
		<content:encoded><![CDATA[<p>Fascinating!</p>
<p>The closing idea that  studying life as a hologenome or even a holosystem stands to make life un-ownable and with ecologicallly minded site specificity is wonderful, indeed ( with high hopes) vastly furthering the paradigm of life science as social enterprise.</p>
<p>&#8220;there&#8217;s a revolution in the wings that will be exciting and equitable&#8221;-you</p>
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	<item>
		<title>Comment on Purging the backlog of thoughts by Jason</title>
		<link>http://blogs.cambia.org/raj/2010/11/12/purging-the-backlog-of-thoughts/#comment-18</link>
		<dc:creator>Jason</dc:creator>
		<pubDate>Fri, 12 Nov 2010 03:14:58 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/?p=89#comment-18</guid>
		<description>can&#039;t wait :)</description>
		<content:encoded><![CDATA[<p>can&#8217;t wait <img src='http://blogs.cambia.org/raj/wp-includes/images/smilies/icon_smile.gif' alt=':)' class='wp-smiley' /> </p>
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		<title>Comment on The Hologenome &amp; Hologenomics: a different lens on evolution by Steve</title>
		<link>http://blogs.cambia.org/raj/2007/09/06/the-hologenome-hologenomics/#comment-8</link>
		<dc:creator>Steve</dc:creator>
		<pubDate>Wed, 10 Nov 2010 12:51:11 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/index.php/2007/09/06/the-hologenome-hologenomics/#comment-8</guid>
		<description>I am a novice, and yet, I find your argument compelling. It lends itself to many possibilities: the 100th monkey theory comes to mind,but moreover, the interdependence of global orgainic systems fits well into this model. So, I humbly salute you, and urge you to continue. In the context of biosynthetic organsms, and areas of AI, artificial life and its evolution, there may be exciting crossovers in time. All the best and thank you for sharing your wisdom...</description>
		<content:encoded><![CDATA[<p>I am a novice, and yet, I find your argument compelling. It lends itself to many possibilities: the 100th monkey theory comes to mind,but moreover, the interdependence of global orgainic systems fits well into this model. So, I humbly salute you, and urge you to continue. In the context of biosynthetic organsms, and areas of AI, artificial life and its evolution, there may be exciting crossovers in time. All the best and thank you for sharing your wisdom&#8230;</p>
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		<title>Comment on USPTO Delivers big time: Free, fast, timely public access to the best patent data by Bulk US Patent Data at Google &#124; Justia Law, Technology &#38; Legal Marketing Blog</title>
		<link>http://blogs.cambia.org/raj/2010/11/04/uspto-delivers-big-time-free-public-access-to-the-best-highest-quality-data/#comment-17</link>
		<dc:creator>Bulk US Patent Data at Google &#124; Justia Law, Technology &#38; Legal Marketing Blog</dc:creator>
		<pubDate>Tue, 09 Nov 2010 14:01:24 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/?p=73#comment-17</guid>
		<description>[...] bulk access to current US patent applications and grants.  As noted by Richard Jefferson in his “Science as Social Enterprise” blog, until recently the bulk data available to users was incomplete in that it did not contain 2010 [...]</description>
		<content:encoded><![CDATA[<p>[...] bulk access to current US patent applications and grants.  As noted by Richard Jefferson in his “Science as Social Enterprise” blog, until recently the bulk data available to users was incomplete in that it did not contain 2010 [...]</p>
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		<title>Comment on USPTO Delivers big time: Free, fast, timely public access to the best patent data by Jackie Hutter</title>
		<link>http://blogs.cambia.org/raj/2010/11/04/uspto-delivers-big-time-free-public-access-to-the-best-highest-quality-data/#comment-16</link>
		<dc:creator>Jackie Hutter</dc:creator>
		<pubDate>Sat, 06 Nov 2010 14:26:09 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/?p=73#comment-16</guid>
		<description>Agree totally!   The changes are amazing.

I had the pleasure of seeing Stu Graham, Chief Economist of the PTO, speak the other day.  We also sat with each other (we know each other from the IP &quot;thinkers&quot; community here in Atlanta).   Stu has been in the PTO for about 8 months now (he is taking leave from his tenured position at Georgia Tech), and his presentation centered on how the USPTO data shows (or does not show) innovation, job creation etc.  He mentioned that his data collection is going more slowly than everyone expected because it is just--my words--too darn hard to collect the necessary data to do high level economic analysis using the existing systems.  The computers have to be allocated (of course) to use of the examiners, and his team had to &quot;take the data as it was available.&quot;

What struck me from his presentation, and our side conversation, is the dearth of interest (or realization or ?) of prior PTO administrations that what the PTO does has real effects on the economy and society.  Put simply, the current PTO administration (and, by inference, the Obama administration) believes that they have a job to do that can affect the outside world.  I don&#039;t want to get all political here, but how can government get smaller, if your framework doesn&#039;t even have a way to measure what a particular agency does?  Having been a patent lawyer for 15 years (and a member of the community who values data over ideology), I am thrilled with the changes at the PTO.

Also, and this is probably apropos of nothing, I asked Stu how he was finding DC.  He said that Kappos has his team working 7 days a week, until 9 pm at night, so he doesn&#039;t get out much.  WOW!  I can&#039;t wait until the next time I am in Alexandria.  I plan on driving by at night to see if there are actually lights on at the PTO after 5:30 pm.  It will be the first time.</description>
		<content:encoded><![CDATA[<p>Agree totally!   The changes are amazing.</p>
<p>I had the pleasure of seeing Stu Graham, Chief Economist of the PTO, speak the other day.  We also sat with each other (we know each other from the IP &#8220;thinkers&#8221; community here in Atlanta).   Stu has been in the PTO for about 8 months now (he is taking leave from his tenured position at Georgia Tech), and his presentation centered on how the USPTO data shows (or does not show) innovation, job creation etc.  He mentioned that his data collection is going more slowly than everyone expected because it is just&#8211;my words&#8211;too darn hard to collect the necessary data to do high level economic analysis using the existing systems.  The computers have to be allocated (of course) to use of the examiners, and his team had to &#8220;take the data as it was available.&#8221;</p>
<p>What struck me from his presentation, and our side conversation, is the dearth of interest (or realization or ?) of prior PTO administrations that what the PTO does has real effects on the economy and society.  Put simply, the current PTO administration (and, by inference, the Obama administration) believes that they have a job to do that can affect the outside world.  I don&#8217;t want to get all political here, but how can government get smaller, if your framework doesn&#8217;t even have a way to measure what a particular agency does?  Having been a patent lawyer for 15 years (and a member of the community who values data over ideology), I am thrilled with the changes at the PTO.</p>
<p>Also, and this is probably apropos of nothing, I asked Stu how he was finding DC.  He said that Kappos has his team working 7 days a week, until 9 pm at night, so he doesn&#8217;t get out much.  WOW!  I can&#8217;t wait until the next time I am in Alexandria.  I plan on driving by at night to see if there are actually lights on at the PTO after 5:30 pm.  It will be the first time.</p>
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		<title>Comment on Reinventing Wheels:  How biological open source licensing works. by K Vijayachandra</title>
		<link>http://blogs.cambia.org/raj/2007/04/04/reinventing-wheels/#comment-4</link>
		<dc:creator>K Vijayachandra</dc:creator>
		<pubDate>Thu, 09 Sep 2010 10:30:08 +0000</pubDate>
		<guid isPermaLink="false">http://blogs.cambia.org/raj/index.php/2007/04/04/reinventing-wheels/#comment-4</guid>
		<description>Hi Richard
Couple of questions out of curiousity
1. Are there materials available under BIOS license outside CAMBIA, by other Universities/Organizations?
2. Is there an International consensus on BIOS (or GPL) licensing?  Are these licenses legally enforceable?
Vijay</description>
		<content:encoded><![CDATA[<p>Hi Richard<br />
Couple of questions out of curiousity<br />
1. Are there materials available under BIOS license outside CAMBIA, by other Universities/Organizations?<br />
2. Is there an International consensus on BIOS (or GPL) licensing?  Are these licenses legally enforceable?<br />
Vijay</p>
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